What Is Mass Spectrometry? How Peptide Identity Is Checked
[Glossary · Quality, storage and rules]

Mass spectrometry (MS)

Also called mass spec, MS, LC-MS, identity test · Reviewed

Definition: Mass spectrometry (MS) is a lab method that weighs molecules. It turns molecules into charged particles and measures their mass very precisely. For peptides it is the usual identity test: if the measured mass matches the expected mass of the molecule, that supports the vial holding what it claims.

Worked example: matching a mass

Checking tirzepatide

  1. The Mounjaro label gives tirzepatide a molecular weight of 4813.53 daltons (Da). A dalton is about the mass of one hydrogen atom.
  2. A mass spectrometry result near 4813.5 Da supports tirzepatide being present.
  3. A main signal far from that, say 3,000 Da, would suggest a different or broken molecule, even if HPLC showed one clean peak.

Why it is paired with HPLC

HPLC separates a mixture and says how much of it is one substance. MS says what each substance is. Together (LC-MS) they answer both questions. Researchers used this method to find that a product sold as TB-500 contained a short, acetylated fragment of thymosin beta 4 (Esposito 2012), and to measure semaglutide in vials bought online (Ashraf 2024).

Licensed drug makers must run at least one identity test on each ingredient themselves, even when a supplier provides a report (21 CFR 211.84).

What it cannot tell you

  • It does not measure sterility or endotoxin.
  • A mass match alone does not tell you how many mg are in the vial. Amount is a separate line on the report. In the online semaglutide study, LC-MS found 28.56% to 38.69% more semaglutide than the labels stated (Ashraf 2024), so amounts can be off in either direction.
  • It covers only the sample tested. Save the lot number with each vial you log.

Read more on Dose Track: TB-500 · Tirzepatide

General education drawn from labels and published studies, not personal medical advice. Your prescriber, pharmacist and the label that came with your product are the final word.

Frequently asked questions

What does mass spec show on a COA?+
Usually the expected mass of the molecule and the measured mass. A close match supports identity.
Can mass spectrometry prove a peptide is safe?+
No. It checks identity. Sterility, endotoxin and amount need other tests.