Short answer: For muscle, a meta-analysis of 9 studies found soy gave similar strength and lean-mass gains to whey or other animal protein with resistance training.1 Whey has more leucine.2 Soy lowered LDL by about 3% to 4% in the trials FDA reviewed; FDA proposed revoking its soy heart claim in 2017, but the rule is still in place.34
| Whey protein | Soy protein | |
|---|---|---|
| Source | Milk2 | Soybeans4 |
| Leucine | More than casein or soy2 | Less than whey2 |
| Muscle with training (9 studies, 266 people) | Strength rose; no difference from soy1 | Similar strength and lean-mass gains1 |
| Cholesterol | Not the focus of the sources checked | LDL down about 4.8 mg/dL vs other proteins (median 25 g a day)3 |
| FDA heart claim | None | 25 g a day claim in 21 CFR 101.82; revocation proposed in 201745 |
| Allergen | Milk is a major food allergen6 | Soy is a major food allergen6 |
Short studies suggest whey stimulates muscle protein building more than soy, likely because of its leucine.1 Over 6 weeks or longer, a 2018 meta-analysis of 9 studies (5 comparing whey with soy) found no difference in strength or lean mass between soy and whey or other animal proteins with resistance training.1
These are study protocols, not personalized advice; confirm any dosing with your prescriber.
Under 21 CFR 101.82, qualifying foods may say that 25 g of soy protein a day, as part of a diet low in saturated fat and cholesterol, may reduce heart disease risk.4 In 2017 FDA proposed revoking the claim, saying the evidence no longer appeared to meet its standard.5 A meta-analysis of 43 of the 46 trials FDA identified found soy lowered LDL by 4.76 mg/dL, about 3% to 4%; one author is from a soy nutrition group.3
More detail: Whey vs pea protein: does plant protein build muscle as well?, Whey vs casein protein: what is the difference?, and the Whey Protein and Soy Protein guides.